ChemMine Tools
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Workbench
My Compounds
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Upload Numeric Data
Cluster
Physicochemical Properties
Similarity Workbench
Drug-Target Search
Search
Structural Similarity Search
Downloads
ChemMine Tools Web Framework
GitHub Page (includes source code)
ChemmineR R library
ChemmineR Manual
Bioconductor page (includes source code)
EI Search and EI Clustering
Newer supported version:
eiR: Accelerated similarity searching of small molecules
Original EI source code (not supported anymore):
ei.tar.bz2
Other Components
fmcsR: Flexible Maximum Common Substructure (FMCS) Searching